ParaHoxozoa

ParaHoxozoa Rentang waktu: 605.2–0 jtyl PreЄ Є O S D C P T J K Pg N Ediakara-Sekarang
Trichoplax adhaerens
Klasifikasi ilmiah
Domain:	Eukaryota
Kerajaan:	Animalia
Subkerajaan:	Eumetazoa
Klad:	ParaHoxozoa
Klad
Placozoa Cnidaria Triploblast/Bilateria

ParaHoxozoa (atau Parahoxozoa) adalah klad hewan yang terdiri dari Bilateria, Placozoa, dan Cnidaria.^[1] Hubungan klad ini relatif terhadap dua garis keturunan hewan lainnya (Ctenophora dan Porifera) masih diperdebatkan. Beberapa studi Filogenomis telah menunjukkan bukti pendukung Ctenophora sebagai saudara Parahoxozoa dan Porifera sebagai kelompok saudara hewan lainnya (contoh ^{[2][3][4][5][6][7]}). Beberapa studi menunjukkan bukti pendukung Porifera sebagai saudara Parahoxozoa dan Ctenophora sebagai kelompok saudara hewan lainnya (contoh ^{[8][9][10][11][12][13][14][15][16][17][18][19][20][21][22][23]}). Pohon di bawah ini, yang kongruen dengan sebagian besar studi filogenomis ini, menyampaikan ketidakpastian ini dengan politomi.

1. ^ Ryan, Joseph F.; Pang, Kevin; Mullikin, James C.; Martindale, Mark Q.; Baxevanis, Andreas D. (2010-10-04). "The homeodomain complement of the ctenophore Mnemiopsis leidyi suggests that Ctenophora and Porifera diverged prior to the Parahoxozoa". EvoDevo. 1 (1): 9. doi:10.1186/2041-9139-1-9. ISSN 2041-9139. PMC 2959044 . PMID 20920347. 
2. ^ Pick, K. S.; Philippe, H.; Schreiber, F.; Erpenbeck, D.; Jackson, D. J.; Wrede, P.; Wiens, M.; Alie, A.; Morgenstern, B.; Manuel, M.; Worheide, G. (2010). "Improved Phylogenomic Taxon Sampling Noticeably Affects Nonbilaterian Relationships". Molecular Biology and Evolution. 27 (9): 1983–1987. doi:10.1093/molbev/msq089 . ISSN 0737-4038. PMC 2922619 . PMID 20378579. 
3. ^ Nosenko, Tetyana; Schreiber, Fabian; Adamska, Maja; Adamski, Marcin; Eitel, Michael; Hammel, Jörg; Maldonado, Manuel; Müller, Werner E.G.; Nickel, Michael; Schierwater, Bernd; Vacelet, Jean; Wiens, Matthias; Wörheide, Gert (2013). "Deep metazoan phylogeny: When different genes tell different stories". Molecular Phylogenetics and Evolution. 67 (1): 223–233. doi:10.1016/j.ympev.2013.01.010. ISSN 1055-7903. PMID 23353073. 
4. ^ Pisani, Davide; Pett, Walker; Dohrmann, Martin; Feuda, Roberto; Rota-Stabelli, Omar; Philippe, Hervé; Lartillot, Nicolas; Wörheide, Gert (15 December 2015). "Genomic data do not support comb jellies as the sister group to all other animals". Proceedings of the National Academy of Sciences. 112 (50): 15402–15407. Bibcode:2015PNAS..11215402P. doi:10.1073/pnas.1518127112. ISSN 0027-8424. PMC 4687580 . PMID 26621703. 
5. ^ Feuda, Roberto; Dohrmann, Martin; Pett, Walker; Philippe, Hervé; Rota-Stabelli, Omar; Lartillot, Nicolas; Wörheide, Gert; Pisani, Davide (2017). "Improved Modeling of Compositional Heterogeneity Supports Sponges as Sister to All Other Animals". Current Biology. 6 (24): 3864–3870.e4. doi:10.1016/j.cub.2017.11.008 . PMID 29199080. 
6. ^ Simion, Paul; Philippe, Hervé; Baurain, Denis; Jager, Muriel; Richter, Daniel J.; Franco, Arnaud Di; Roure, Béatrice; Satoh, Nori; Quéinnec, Éric (3 April 2017). "A Large and Consistent Phylogenomic Dataset Supports Sponges as the Sister Group to All Other Animals" (PDF). Current Biology (Submitted manuscript). 27 (7): 958–967. doi:10.1016/j.cub.2017.02.031 . ISSN 0960-9822. PMID 28318975.  Parameter |s2cid= yang tidak diketahui akan diabaikan (bantuan)
7. ^ Leclère, Lucas; Horin, Coralie; Chevalier, Sandra; Lapébie, Pascal; Dru, Philippe; Peron, Sophie; Jager, Muriel; Condamine, Thomas; Pottin, Karen; Romano, Séverine; Steger, Julia; Sinigaglia, Chiara; Barreau, Carine; Quiroga Artigas, Gonzalo; Ruggiero, Antonella; Fourrage, Cécile; Kraus, Johanna E. M.; Poulain, Julie; Aury, Jean-Marc; Wincker, Patrick; Quéinnec, Eric; Technau, Ulrich; Manuel, Michaël; Momose, Tsuyoshi; Houliston, Evelyn; Copley, Richard R. (2019). "The genome of the jellyfish Clytia hemisphaerica and the evolution of the cnidarian life-cycle". Nature Ecology & Evolution. 3 (5): 801–810. doi:10.1038/s41559-019-0833-2 . ISSN 2397-334X. PMID 30858591. 
8. ^ Dunn, Casey W.; Hejnol, Andreas; Matus, David Q.; Pang, Kevin; Browne, William E.; Smith, Stephen A.; Seaver, Elaine; Rouse, Greg W.; Obst, Matthias; Edgecombe, Gregory D.; Sørensen, Martin V.; Haddock, Steven H. D.; Schmidt-Rhaesa, Andreas; Okusu, Akiko; Kristensen, Reinhardt Møbjerg; Wheeler, Ward C.; Martindale, Mark Q.; Giribet, Gonzalo (2008). "Broad phylogenomic sampling improves resolution of the animal tree of life". Nature. 452 (7188): 745–749. Bibcode:2008Natur.452..745D. doi:10.1038/nature06614. ISSN 0028-0836. PMID 18322464.  Parameter |s2cid= yang tidak diketahui akan diabaikan (bantuan)
9. ^ Hejnol, Andreas; Obst, Matthias; Stamatakis, Alexandros; Ott, Michael; Rouse, Greg W.; Edgecombe, Gregory D.; Martinez, Pedro; Baguñà, Jaume; Bailly, Xavier; Jondelius, Ulf; Wiens, Matthias; Müller, Werner E. G.; Seaver, Elaine; Wheeler, Ward C.; Martindale, Mark Q.; Giribet, Gonzalo; Dunn, Casey W. (2009). "Assessing the root of bilaterian animals with scalable phylogenomic methods". Proceedings of the Royal Society B: Biological Sciences. 276 (1677): 4261–4270. doi:10.1098/rspb.2009.0896. ISSN 0962-8452. PMC 2817096 . PMID 19759036. 
10. ^ Ryan, J. F.; Pang, K.; Schnitzler, C. E.; Nguyen, A.-D.; Moreland, R. T.; Simmons, D. K.; Koch, B. J.; Francis, W. R.; Havlak, P.; Smith, S. A.; Putnam, N. H.; Haddock, S. H. D.; Dunn, C. W.; Wolfsberg, T. G.; Mullikin, J. C.; Martindale, M. Q.; Baxevanis, A. D. (2013). "The Genome of the Ctenophore Mnemiopsis leidyi and Its Implications for Cell Type Evolution". Science. 342 (6164): 1242592. doi:10.1126/science.1242592. ISSN 0036-8075. PMC 3920664 . PMID 24337300. 
11. ^ Moroz, Leonid L.; Kocot, Kevin M.; Citarella, Mathew R.; Dosung, Sohn; Norekian, Tigran P.; Povolotskaya, Inna S.; Grigorenko, Anastasia P.; Dailey, Christopher; Berezikov, Eugene; Buckley, Katherine M.; Ptitsyn, Andrey; Reshetov, Denis; Mukherjee, Krishanu; Moroz, Tatiana P.; Bobkova, Yelena; Yu, Fahong; Kapitonov, Vladimir V.; Jurka, Jerzy; Bobkov, Yuri V.; Swore, Joshua J.; Girardo, David O.; Fodor, Alexander; Gusev, Fedor; Sanford, Rachel; Bruders, Rebecca; Kittler, Ellen; Mills, Claudia E.; Rast, Jonathan P.; Derelle, Romain; Solovyev, Victor V.; Kondrashov, Fyodor A.; Swalla, Billie J.; Sweedler, Jonathan V.; Rogaev, Evgeny I.; Halanych, Kenneth M.; Kohn, Andrea B. (2014). "The ctenophore genome and the evolutionary origins of neural systems". Nature. 510 (7503): 109–114. Bibcode:2014Natur.510..109M. doi:10.1038/nature13400 . ISSN 0028-0836. PMC 4337882 . PMID 24847885. 
12. ^ Chang, E. Sally; Neuhof, Moran; Rubinstein, Nimrod D.; Diamant, Arik; Philippe, Hervé; Huchon, Dorothée; Cartwright, Paulyn (2015). "Genomic insights into the evolutionary origin of Myxozoa within Cnidaria". Proceedings of the National Academy of Sciences. 112 (48): 14912–14917. Bibcode:2015PNAS..11214912C. doi:10.1073/pnas.1511468112 . ISSN 0027-8424. PMC 4672818 . PMID 26627241. 
13. ^ Whelan, Nathan V.; Kocot, Kevin M.; Moroz, Leonid L.; Halanych, Kenneth M. (2015). "Error, signal, and the placement of Ctenophora sister to all other animals". Proceedings of the National Academy of Sciences. 112 (18): 5773–5778. Bibcode:2015PNAS..112.5773W. doi:10.1073/pnas.1503453112 . ISSN 0027-8424. PMC 4426464 . PMID 25902535. 
14. ^ Torruella, Guifré; de Mendoza, Alex; Grau-Bové, Xavier; Antó, Meritxell; Chaplin, Mark A.; del Campo, Javier; Eme, Laura; Pérez-Cordón, Gregorio; Whipps, Christopher M.; Nichols, Krista M.; Paley, Richard; Roger, Andrew J.; Sitjà-Bobadilla, Ariadna; Donachie, Stuart; Ruiz-Trillo, Iñaki (2015). "Phylogenomics Reveals Convergent Evolution of Lifestyles in Close Relatives of Animals and Fungi". Current Biology. 25 (18): 2404–2410. doi:10.1016/j.cub.2015.07.053 . ISSN 0960-9822. PMID 26365255. 
15. ^ Borowiec, Marek L.; Lee, Ernest K.; Chiu, Joanna C.; Plachetzki, David C. (2015). "Extracting phylogenetic signal and accounting for bias in whole-genome data sets supports the Ctenophora as sister to remaining Metazoa". BMC Genomics. 16 (1): 987. doi:10.1186/s12864-015-2146-4 . ISSN 1471-2164. PMC 4657218 . PMID 26596625. 
16. ^ Shen, Xing-Xing; Hittinger, Chris Todd; Rokas, Antonis (2017). "Contentious relationships in phylogenomic studies can be driven by a handful of genes". Nature Ecology & Evolution. 1 (5): 126. doi:10.1038/s41559-017-0126. ISSN 2397-334X. PMC 5560076 . PMID 28812701. 
17. ^ Arcila, Dahiana; Ortí, Guillermo; Vari, Richard; Armbruster, Jonathan W.; Stiassny, Melanie L. J.; Ko, Kyung D.; Sabaj, Mark H.; Lundberg, John; Revell, Liam J.; Betancur-R., Ricardo (2017). "Genome-wide interrogation advances resolution of recalcitrant groups in the tree of life". Nature Ecology & Evolution. 1 (2): 20. doi:10.1038/s41559-016-0020. ISSN 2397-334X. PMID 28812610.  Parameter |s2cid= yang tidak diketahui akan diabaikan (bantuan)
18. ^ Whelan, Nathan V.; Kocot, Kevin M.; Moroz, Tatiana P.; Mukherjee, Krishanu; Williams, Peter; Paulay, Gustav; Moroz, Leonid L.; Halanych, Kenneth M. (2017). "Ctenophore relationships and their placement as the sister group to all other animals". Nature Ecology & Evolution. 1 (11): 1737–1746. doi:10.1038/s41559-017-0331-3. ISSN 2397-334X. PMC 5664179 . PMID 28993654. 
19. ^ Pandey, Akanksha; Braun, Edward L. (2021). "The Roles of Protein Structure, Taxon Sampling, and Model Complexity in Phylogenomics: A Case Study Focused on Early Animal Divergences". Biophysica. 1 (2): 87–105. doi:10.3390/biophysica1020008 . ISSN 2673-4125. 
20. ^ Laumer, Christopher E.; Fernández, Rosa; Lemer, Sarah; Combosch, David; Kocot, Kevin M.; Riesgo, Ana; Andrade, Sónia C. S.; Sterrer, Wolfgang; Sørensen, Martin V.; Giribet, Gonzalo (2019). "Revisiting metazoan phylogeny with genomic sampling of all phyla". Proceedings of the Royal Society B: Biological Sciences. 286 (1906): 20190831. doi:10.1098/rspb.2019.0831 . ISSN 0962-8452. PMC 6650721 . PMID 31288696. 
21. ^ Jeon, Yeonsu; Park, Seung Gu; Lee, Nayun; Weber, Jessica A; Kim, Hui-Su; Hwang, Sung-Jin; Woo, Seonock; Kim, Hak-Min; Bhak, Youngjune; Jeon, Sungwon; Lee, Nayoung; Jo, Yejin; Blazyte, Asta; Ryu, Taewoo; Cho, Yun Sung; Kim, Hyunho; Lee, Jung-Hyun; Yim, Hyung-Soon; Bhak, Jong; Yum, Seungshic; Ochman, Howard (2019). "The Draft Genome of an Octocoral, Dendronephthya gigantea". Genome Biology and Evolution. 11 (3): 949–953. doi:10.1093/gbe/evz043 . ISSN 1759-6653. PMC 6447388 . PMID 30825304. 
22. ^ Kim, Hak-Min; Weber, Jessica A.; Lee, Nayoung; Park, Seung Gu; Cho, Yun Sung; Bhak, Youngjune; Lee, Nayun; Jeon, Yeonsu; Jeon, Sungwon; Luria, Victor; Karger, Amir; Kirschner, Marc W.; Jo, Ye Jin; Woo, Seonock; Shin, Kyoungsoon; Chung, Oksung; Ryu, Jae-Chun; Yim, Hyung-Soon; Lee, Jung-Hyun; Edwards, Jeremy S.; Manica, Andrea; Bhak, Jong; Yum, Seungshic (2019). "The genome of the giant Nomura's jellyfish sheds light on the early evolution of active predation". BMC Biology. 17 (1): 28. doi:10.1186/s12915-019-0643-7 . ISSN 1741-7007. PMC 6441219 . PMID 30925871. 
23. ^ Erives, Albert; Fritzsch, Bernd (2020). "A Screen for Gene Paralogies Delineating Evolutionary Branching Order of Early Metazoa". G3: Genes, Genomes, Genetics. 10 (2): 811–826. doi:10.1534/g3.119.400951. ISSN 2160-1836. PMC 7003098 . PMID 31879283.